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Salt River running east to west through the southern part of the basin from the confluence of the White and Black Rivers
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White River and its tributaries in the northeastern portion of the basin
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Black River running from the eastern basin boundary to the Salt River, which also demarcates part of Graham, Apache, Navajo and Greenlee county boundaries
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Other major tributaries to the Salt River including Cherry Creek, Canyon Creek, Cibecue Creek, Carrizo Creek and Cedar Creek
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Theodore Roosevelt Lake in the western portion of the basin and Apache Lake, Canyon Lake and Saguaro Lake in the vicinity of Tortilla Flat
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Hawley Lake, Sunrise Lake, Crescent Lake and Big Lake in the high-elevation northeastern portion of the basin
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Salt River Canyon (not labeled on map) along the Salt River and numerous side canyons such as Sycamore Canyon and Sawmill Canyon
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Superstition and Pinal Mountains and Natanes Plateau along the southern basin boundary
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Mogollon Rim along the northern basin boundary
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Bonito Prairie between the White and Black Rivers south of Fort Apache
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Four Peaks along the Maricopa and Gila County line in the Mazatzal Mountains and the Sierra Ancha Mountains south of Young
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White Mountains in Apache County which contain the highest peak in the basin Mt. Baldy at 11,403 feet
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The lowest point at 1,200 feet where the Salt River exits the basin